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1

Recent Developments in Clinical Terminologies — SNOMED CT, LOINC, and RxNorm

Bodenreider, Oliver, Cornet, Ronald, Vreeman, Daniel

Journal:

Yearbook of medical informatics

Year:

2018

Language:

english

File:

PDF, 1.21 MB

english, 2018

2

Analyzing polysemous concepts from a clinical perspective: Application to auditing concept categorization in the UMLS

Fleur Mougin, Olivier Bodenreider, Anita Burgun

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 554 KB

english, 2009

3

Assessing the consistency of a biomedical terminology through lexical knowledge

Olivier Bodenreider, Anita Burgun, Thomas C Rindflesch

Journal:

International Journal of Medical Informatics

Year:

2002

Language:

english

File:

PDF, 124 KB

english, 2002

4

The Unified Medical Language System (UMLS): integrating biomedical terminology

Bodenreider, O.

Journal:

Nucleic Acids Research

Year:

2004

Language:

english

File:

PDF, 151 KB

english, 2004

5

The new International Classification of Diseases 11th edition: a comparative analysis with ICD-10 and ICD-10-CM

Fung, Kin Wah, Xu, , Julia, Bodenreider, Olivier

Journal:

Journal of the American Medical Informatics Association

Year:

2020

File:

PDF, 527 KB

2020

6

Ontological research and its applications to the biomedical domain

Miguel E. Ruiz, Olivier Bodenreider, Eric Little, Padmini Srinivasan

Journal:

Proceedings of the American Society for Information Science and Technology

Year:

2005

Language:

english

File:

PDF, 23 KB

english, 2005

7

A fluorescence quenching assay to discriminate between specific and nonspecific inhibitors of dengue virus protease

Christophe Bodenreider, David Beer, Thomas H. Keller, Sebastian Sonntag, Daying Wen, LiJian Yap, Yin Hoe Yau, Susana Geifman Shochat, Danzhi Huang, Ting Zhou, Amedeo Caflisch, Xun-Cheng Su, Kiyoshi Oz

Journal:

Analytical Biochemistry

Year:

2009

Language:

english

File:

PDF, 651 KB

english, 2009

8

Law and order: Assessing and enforcing compliance with ontological modeling principles in the Foundational Model of Anatomy

Songmao Zhang, Olivier Bodenreider

Journal:

Computers in Biology and Medicine

Year:

2006

Language:

english

File:

PDF, 288 KB

english, 2006

9

The foundational model of anatomy in OWL: Experience and perspectives

Christine Golbreich, Songmao Zhang, Olivier Bodenreider

Journal:

Web Semantics: Science, Services and Agents on the World Wide Web

Year:

2006

Language:

english

File:

PDF, 886 KB

english, 2006

10

Methodology for using the UMLS as a background knowledge for the description of surgical procedures

A. Burgun, G. Botti, O. Bodenreider, D. Delamarre, J.M. Levêque, B. Lukacs, D. Mayeux, M. Bremond, F. Kohle, M. Fieschi, P. Le Beux

Journal:

International Journal of Bio-Medical Computing

Year:

1996

Language:

english

File:

PDF, 1.03 MB

english, 1996

11

Role of periosteum and bone marrow in lengthening: A quantitative study in rabbits using dexa

J-M. Guichet, P. Braillon, O. Bodenreider, P. Lascombes

Journal:

Journal of Biomechanics

Year:

1998

Language:

english

File:

PDF, 169 KB

english, 1998

12

De la classification à la connaissance des maladies: une réflexion à partir de la classification internationale des maladies (CIM)

G Botti, O Bodenreider, A Burgun, P Le Beux, M Fieschi

Journal:

Year:

2000

File:

PDF, 1.31 MB

2000

13

Comment les usagers accèdent à l'information médicale aux états-unis: l'exemple de medlineplus

Journal:

Year:

2000

File:

PDF, 583 KB

2000

14

Comparing two approaches for aligning representations of anatomy

Songmao Zhang, Peter Mork, Olivier Bodenreider, Philip A. Bernstein

Journal:

Artificial Intelligence in Medicine

Year:

2007

Language:

english

File:

PDF, 308 KB

english, 2007

15

Investigating subsumption in SNOMED CT: An exploration into large description logic-based biomedical terminologies

Olivier Bodenreider, Barry Smith, Anand Kumar, Anita Burgun

Journal:

Artificial Intelligence in Medicine

Year:

2007

Language:

english

File:

PDF, 752 KB

english, 2007

16

Exploring semantic groups through visual approaches

Olivier Bodenreider, Alexa T McCray

Journal:

Journal of Biomedical Informatics

Year:

2003

Language:

english

File:

PDF, 1.08 MB

english, 2003

17

An ontology-driven semantic mashup of gene and biological pathway information: Application to the domain of nicotine dependence

Satya S. Sahoo, Olivier Bodenreider, Joni L. Rutter, Karen J. Skinner, Amit P. Sheth

Journal:

Journal of Biomedical Informatics

Year:

2008

Language:

english

File:

PDF, 1.14 MB

english, 2008

18

The caBIG terminology review process

James J. Cimino, Terry F. Hayamizu, Olivier Bodenreider, Brian Davis, Grace A. Stafford, Martin Ringwald

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 507 KB

english, 2009

19

Auditing associative relations across two knowledge sources

Lowell T. Vizenor, Olivier Bodenreider, Alexa T. McCray

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 1.52 MB

english, 2009

20

A graph-based approach to auditing RxNorm

Olivier Bodenreider, Lee B. Peters

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 825 KB

english, 2009

21

A unified framework for managing provenance information in translational research

Satya S Sahoo, Vinh Nguyen, Olivier Bodenreider, Priti Parikh, Todd Minning, Amit P Sheth

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.53 MB

english, 2011

22

Mapping data elements to terminological resources for integrating biomedical data sources

Fleur Mougin, Anita Burgun, Olivier Bodenreider

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 357 KB

english, 2006

23

Advancing translational research with the Semantic Web

Alan Ruttenberg, Tim Clark, William Bug, Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M Scott Marshall,

Journal:

BMC Bioinformatics

Year:

2007

Language:

english

File:

PDF, 381 KB

english, 2007

24

Global similarity and local divergence in human and mouse gene co-expression networks

Panayiotis Tsaparas, Leonardo Mariño-Ramírez, Olivier Bodenreider, Eugene V Koonin, I King Jordan

Journal:

BMC Evolutionary Biology

Year:

2006

Language:

english

File:

PDF, 1.56 MB

english, 2006

25

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside

Joanne S Luciano, Bosse Andersson, Colin Batchelor, Olivier Bodenreider, Tim Clark, Christine K Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter Kos, Julia

Journal:

Journal of Biomedical Semantics

Year:

2011

Language:

english

File:

PDF, 753 KB

english, 2011

26

Interpretation of Protein Folding ψ Values

Christophe Bodenreider, Thomas Kiefhaber

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 375 KB

english, 2005

27

A mutation-centric approach to identifying pharmacogenomic relations in text

Bastien Rance, Emily Doughty, Dina Demner-Fushman, Maricel G. Kann, Olivier Bodenreider

Journal:

Journal of Biomedical Informatics

Year:

2012

Language:

english

File:

PDF, 256 KB

english, 2012

28

[IEEE 18th IEEE Symposium on Computer-Based Medical Systems (CBMS'05) - Dublin, Ireland (23-24 June 2005)] 18th IEEE Symposium on Computer-Based Medical Systems (CBMS'05) - An Ontology-Driven Clustering Method for Supporting Gene Expression Analysis

Haiying Wang,, Azuaje, F., Bodenreider, O.

Year:

2005

Language:

english

File:

PDF, 198 KB

english, 2005

29

[Lecture Notes in Computer Science] Data Integration in the Life Sciences Volume 7348 ||

Bodenreider, Olivier, Rance, Bastien

Year:

2012

Language:

english

File:

PDF, 5.09 MB

english, 2012

30

A graph-based recovery and decomposition of Swanson’s hypothesis using semantic predications

Cameron, Delroy, Bodenreider, Olivier, Yalamanchili, Hima, Danh, Tu, Vallabhaneni, Sreeram, Thirunarayan, Krishnaprasad, Sheth, Amit P., Rindflesch, Thomas C.

Journal:

Journal of Biomedical Informatics

Year:

2013

Language:

english

File:

PDF, 916 KB

english, 2013

31

METROPOLITAN ASYLUMS BOARD STATISTICS.

Cameron, Delroy, Bodenreider, Olivier, Yalamanchili, Hima, Danh, Tu, Vallabhaneni, Sreeram, Thirunarayan, Krishnaprasad, Sheth, Amit P., Rindflesch, Thomas C.

Journal:

Year:

1897

Language:

english

File:

PDF, 455 KB

english, 1897

32

Kinetic Characterization of the pH-Dependent Oligomerization of R67 Dihydrofolate Reductase †

Méjean, Annick, Bodenreider, Christophe, Schuerer, Katja, Goldberg, Michel E.

Journal:

Year:

2001

Language:

english

File:

PDF, 105 KB

english, 2001

33

A framework for assessing the consistency of drug classes across sources

Rainer Winnenburg,Olivier Bodenreider

Journal:

Journal of Biomedical Semantics

Year:

2014

Language:

english

File:

PDF, 772 KB

english, 2014

34

Flaviviral Protease Inhibitors Identified by Fragment-Based Library Docking into a Structure Generated by Molecular Dynamics

Ekonomiuk, Dariusz, Su, Xun-Cheng, Ozawa, Kiyoshi, Bodenreider, Christophe, Lim, Siew Pheng, Otting, Gottfried, Huang, Danzhi, Caflisch, Amedeo

Journal:

Journal of Medicinal Chemistry

Year:

2009

Language:

english

File:

PDF, 3.01 MB

english, 2009

35

Kinetic Analysis of R67 Dihydrofolate Reductase Folding: From the Unfolded Monomer to the Native Tetramer †

Bodenreider, Christophe, Kellershohn, Nicolas, Goldberg, Michel E., Méjean, Annick

Journal:

Year:

2002

Language:

english

File:

PDF, 154 KB

english, 2002

36

Periosteum and bone marrow in bone lengthening: A DEXA quantitative evaluation in rabbits

Guichet, Jean-Marc, Braillon, Pierre, Bodenreider, Olivier, Lascombes, Pierre

Journal:

Acta Orthopaedica

Year:

1998

Language:

english

File:

PDF, 450 KB

english, 1998

37

[IEEE 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshop, BIBMW - Washington, DC, USA (2009.11.1-2009.11.4)] 2009 IEEE International Conference on Bioinformatics and Biomedicine Workshop - Mining association rules among gene functions in clusters of similar gene expression maps

An, Li, Obradovic, Zoran, Smith, Desmond, Bodenreider, Olivier, Megalooikonomou, Vasileios

Year:

2009

Language:

english

File:

PDF, 609 KB

english, 2009

38

[IEEE Sixth IEEE International Conference on Data Mining - Workshops (ICDMW'06) - Hong Kong, China (2006.12.18-2006.12.22)] Sixth IEEE International Conference on Data Mining - Workshops (ICDMW'06) - Predictive Integration of Gene Ontology-Driven Similarity and Functional Interactions

Azuaje, Francisco, Wang, Haiying, Zheng, Huiru, Bodenreider, Olivier, Chesneau, Alban

Year:

2006

Language:

english

File:

PDF, 279 KB

english, 2006

39

[IEEE 2011 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Atlanta, GA, USA (2011.11.12-2011.11.15)] 2011 IEEE International Conference on Bioinformatics and Biomedicine - Semantic Predications for Complex Information Needs in Biomedical Literature

Cameron, Delroy, Kavuluru, Ramakanth, Bodenreider, Olivier, Mendes, Pablo N., Sheth, Amit P., Thirunarayan, Krishnaprasad

Year:

2011

Language:

english

File:

PDF, 471 KB

english, 2011

40

Alignment of the UMLS semantic network with BioTop: methodology and assessment

Schulz, S., Beisswanger, E., van den Hoek, L., Bodenreider, O., van Mulligen, E. M.

Journal:

Year:

2009

Language:

english

File:

PDF, 145 KB

english, 2009

41

[ACM Press the 2nd ACM SIGHIT symposium - Miami, Florida, USA (2012.01.28-2012.01.30)] Proceedings of the 2nd ACM SIGHIT symposium on International health informatics - IHI '12 - Comparing drug-class membership in ATC and NDF-RT

Mougin, Fleur, Burgun, Anita, Bodenreider, Olivier

Year:

2012

Language:

english

File:

PDF, 496 KB

english, 2012

42

[IEEE 2004 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology - La Jolla, CA, USA (7-8 Oct. 2004)] IGARSS 2004. 2004 IEEE International Geoscience and Remote Sensing (IEEE Cat. No.04CH37612) - Gene expression correlation and gene ontology-based similarity: an assessment of quantitative relationships

Wang, H., Azuaje, F., Bodenreider, O., Dopazo, J.

Year:

2004

Language:

english

File:

PDF, 456 KB

english, 2004

43

[IEEE Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering - Taichung, Taiwan (19-21 May 2004)] Proceedings. Fourth IEEE Symposium on Bioinformatics and Bioengineering - Incorporating ontology-driven similarity knowledge into functional genomics: an exploratory study

Azuaje, F., Bodenreider, O.

Year:

2004

Language:

english

File:

PDF, 538 KB

english, 2004

44

Context-driven automatic subgraph creation for literature-based discovery

Cameron, Delroy, Kavuluru, Ramakanth, Rindflesch, Thomas C., Sheth, Amit P., Thirunarayan, Krishnaprasad, Bodenreider, Olivier

Journal:

Journal of Biomedical Informatics

Year:

2015

Language:

english

File:

PDF, 3.09 MB

english, 2015

45

Small Molecule Inhibitors That Selectively Block Dengue Virus Methyltransferase

Lim, S. P., Sonntag, L. S., Noble, C., Nilar, S. H., Ng, R. H., Zou, G., Monaghan, P., Chung, K. Y., Dong, H., Liu, B., Bodenreider, C., Lee, G., Ding, M., Chan, W. L., Wang, G., Jian, Y. L., Chao, A.

Journal:

Journal of Biological Chemistry

Year:

2011

Language:

english

File:

PDF, 2.13 MB

english, 2011

46

Structural and Functional Characterization of an Essential RTX Subdomain of Bordetella pertussis Adenylate Cyclase Toxin

Bauche, C., Chenal, A., Knapp, O., Bodenreider, C., Benz, R., Chaffotte, A., Ladant, D.

Journal:

Journal of Biological Chemistry

Year:

2006

Language:

english

File:

PDF, 1.24 MB

english, 2006

47

Antifolding Activity of the SecB Chaperone Is Essential for Secretion of HasA, a Quickly Folding ABC Pathway Substrate

Wolff, Nicolas, Sapriel, Guillaume, Bodenreider, Christophe, Chaffotte, Alain, Delepelaire, Philippe

Journal:

Journal of Biological Chemistry

Year:

2003

Language:

english

File:

PDF, 661 KB

english, 2003

48

Bio-ontologies: current trends and future directions

Bodenreider, O.

Journal:

Briefings in Bioinformatics

Year:

2006

Language:

english

File:

PDF, 426 KB

english, 2006

49

Exploring adverse drug events at the class level

Winnenburg, Rainer, Sorbello, Alfred, Bodenreider, Olivier

Journal:

Journal of Biomedical Semantics

Year:

2015

Language:

english

File:

PDF, 1.51 MB

english, 2015

50

Using description logics to evaluate the consistency of drug-class membership relations in NDF-RT

Winnenburg, Rainer, Mortensen, Jonathan M, Bodenreider, Olivier

Journal:

Journal of Biomedical Semantics

Year:

2015

Language:

english

File:

PDF, 3.10 MB

english, 2015